J5_9B0P_003
3D structure
- PDB id
- 9B0P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human Hibernating class1 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GCAAGCCGG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 9B0P|1|L5|G|3620, 9B0P|1|L5|G|3625
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9B0P_003 not in the Motif Atlas
- Homologous match to J5_8CRE_004
- Geometric discrepancy: 0.0925
- The information below is about J5_8CRE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9B0P|1|L5|G|2855
9B0P|1|L5|C|2856
9B0P|1|L5|A|2857
9B0P|1|L5|A|2858
9B0P|1|L5|G|2859
9B0P|1|L5|C|2860
9B0P|1|L5|C|2861
9B0P|1|L5|G|2862
9B0P|1|L5|G|2863
*
9B0P|1|L5|U|2887
9B0P|1|L5|G|2888
*
9B0P|1|L5|U|3613
9B0P|1|L5|G|3614
*
9B0P|1|L5|C|3618
9B0P|1|L5|G|3619
9B0P|1|L5|G|3620
9B0P|1|L5|A|3621
9B0P|1|L5|C|3622
9B0P|1|L5|C|3623
9B0P|1|L5|A|3624
9B0P|1|L5|G|3625
9B0P|1|L5|G|3626
*
9B0P|1|L5|C|3835
9B0P|1|L5|A|3836
9B0P|1|L5|C|3837
Current chains
- Chain L5
- 28S rRNA [Homo sapiens]
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LR
- 60S ribosomal protein L19
- Chain LV
- 60S ribosomal protein L23
- Chain LW
- Ribosomal protein L24
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: