J5_9B0Q_013

3D structure

PDB id

9B0Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-back di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGUCGGCAAGCCGG*UG*UG*CGGACCAGG*CACUGU

Length

33 nucleotides

Bulged bases

9B0Q|1|l5|G|3620, 9B0Q|1|l5|G|3625, 9B0Q|1|l5|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B0Q|1|l5|A|2850
9B0Q|1|l5|G|2851
9B0Q|1|l5|U|2852
9B0Q|1|l5|C|2853
9B0Q|1|l5|G|2854
9B0Q|1|l5|G|2855
9B0Q|1|l5|C|2856
9B0Q|1|l5|A|2857
9B0Q|1|l5|A|2858
9B0Q|1|l5|G|2859
9B0Q|1|l5|C|2860
9B0Q|1|l5|C|2861
9B0Q|1|l5|G|2862
9B0Q|1|l5|G|2863
*
9B0Q|1|l5|U|2887
9B0Q|1|l5|G|2888
*
9B0Q|1|l5|U|3613
9B0Q|1|l5|G|3614
*
9B0Q|1|l5|C|3618
9B0Q|1|l5|G|3619
9B0Q|1|l5|G|3620
9B0Q|1|l5|A|3621
9B0Q|1|l5|C|3622
9B0Q|1|l5|C|3623
9B0Q|1|l5|A|3624
9B0Q|1|l5|G|3625
9B0Q|1|l5|G|3626
*
9B0Q|1|l5|C|3835
9B0Q|1|l5|A|3836
9B0Q|1|l5|C|3837
9B0Q|1|l5|U|3838
9B0Q|1|l5|G|3839
9B0Q|1|l5|U|3840

Current chains

Chain l5

28S rRNA [Homo sapiens]

Nearby chains

Chain lB

Large ribosomal subunit protein uL3

Chain lR

60S ribosomal protein L19

Chain lV

60S ribosomal protein L23

Chain lW

Ribosomal protein L24