J5_9B0Q_017
3D structure
- PDB id
- 9B0Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-back di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG
- Length
- 35 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9B0Q|1|s2|C|30
9B0Q|1|s2|U|31
9B0Q|1|s2|U|32
9B0Q|1|s2|G|33
9B0Q|1|s2|U|34
*
9B0Q|1|s2|A|521
9B0Q|1|s2|A|522
9B0Q|1|s2|A|523
9B0Q|1|s2|U|524
9B0Q|1|s2|A|525
9B0Q|1|s2|A|526
9B0Q|1|s2|C|527
*
9B0Q|1|s2|G|558
9B0Q|1|s2|G|559
9B0Q|1|s2|A|560
9B0Q|1|s2|A|561
9B0Q|1|s2|U|562
9B0Q|1|s2|G|563
9B0Q|1|s2|A|564
9B0Q|1|s2|G|565
*
9B0Q|1|s2|C|585
9B0Q|1|s2|G|586
9B0Q|1|s2|A|587
9B0Q|1|s2|G|588
9B0Q|1|s2|G|589
9B0Q|1|s2|A|590
9B0Q|1|s2|U|591
9B0Q|1|s2|C|592
9B0Q|1|s2|C|593
9B0Q|1|s2|A|594
9B0Q|1|s2|U|595
*
9B0Q|1|s2|A|641
9B0Q|1|s2|U|642
9B0Q|1|s2|A|643
9B0Q|1|s2|G|644
Current chains
- Chain s2
- 18S rRNA [Homo sapiens]
Nearby chains
- Chain SO
- Small ribosomal subunit protein uS11
- Chain cH
- Endothelial differentiation-related factor 1
- Chain sJ
- 40S ribosomal protein S9
- Chain sX
- 40S ribosomal protein S23
- Chain se
- Small ribosomal subunit protein eS30
Coloring options: