J5_9B4Z_002

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B4Z|1|AA|C|36
9B4Z|1|AA|U|37
9B4Z|1|AA|G|38
9B4Z|1|AA|G|39
*
9B4Z|1|AA|C|403
9B4Z|1|AA|G|404
9B4Z|1|AA|U|405
9B4Z|1|AA|G|406
*
9B4Z|1|AA|C|436
9B4Z|1|AA|U|437
9B4Z|1|AA|U|438
9B4Z|1|AA|U|439
9B4Z|1|AA|C|440
9B4Z|1|AA|A|441
9B4Z|1|AA|G|442
*
9B4Z|1|AA|C|492
9B4Z|1|AA|A|493
9B4Z|1|AA|G|494
9B4Z|1|AA|A|495
9B4Z|1|AA|A|496
9B4Z|1|AA|G|497
9B4Z|1|AA|A|498
9B4Z|1|AA|A|499
9B4Z|1|AA|G|500
*
9B4Z|1|AA|C|545
9B4Z|1|AA|A|546
9B4Z|1|AA|A|547
9B4Z|1|AA|G|548

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12