J5_9B4Z_003

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

9B4Z|1|AA|A|109, 9B4Z|1|AA|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B4Z|1|AA|C|58
9B4Z|1|AA|A|59
9B4Z|1|AA|A|60
9B4Z|1|AA|G|61
*
9B4Z|1|AA|C|106
9B4Z|1|AA|G|107
9B4Z|1|AA|G|108
9B4Z|1|AA|A|109
9B4Z|1|AA|C|110
9B4Z|1|AA|G|111
9B4Z|1|AA|G|112
9B4Z|1|AA|G|113
*
9B4Z|1|AA|C|314
9B4Z|1|AA|A|315
9B4Z|1|AA|C|316
*
9B4Z|1|AA|G|337
9B4Z|1|AA|A|338
9B4Z|1|AA|C|339
*
9B4Z|1|AA|G|350
9B4Z|1|AA|G|351
9B4Z|1|AA|C|352
9B4Z|1|AA|A|353
9B4Z|1|AA|G|354

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AT

30S ribosomal protein S20

Chain BK

50S ribosomal protein L14

Chain BP

50S ribosomal protein L19