J5_9B4Z_007

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

9B4Z|1|BA|U|1758, 9B4Z|1|BA|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B4Z|1|BA|G|1674
9B4Z|1|BA|C|1675
9B4Z|1|BA|A|1676
9B4Z|1|BA|A|1677
9B4Z|1|BA|A|1678
9B4Z|1|BA|A|1679
9B4Z|1|BA|U|1680
9B4Z|1|BA|G|1681
9B4Z|1|BA|G|1682
*
9B4Z|1|BA|C|1706
9B4Z|1|BA|G|1707
*
9B4Z|1|BA|U|1751
9B4Z|1|BA|C|1752
*
9B4Z|1|BA|G|1756
9B4Z|1|BA|A|1757
9B4Z|1|BA|U|1758
9B4Z|1|BA|A|1759
9B4Z|1|BA|C|1760
9B4Z|1|BA|C|1761
9B4Z|1|BA|A|1762
9B4Z|1|BA|G|1763
9B4Z|1|BA|C|1764
*
9B4Z|1|BA|G|1988
9B4Z|1|BA|G|1989
9B4Z|1|BA|C|1990

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S ribosomal protein L3

Chain BK

50S ribosomal protein L14

Chain BP

50S ribosomal protein L19