J5_9B4Z_008
3D structure
- PDB id
- 9B4Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 9B4Z|1|BA|A|2062, 9B4Z|1|BA|A|2448, 9B4Z|1|BA|U|2449, 9B4Z|1|BA|U|2609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9B4Z|1|BA|G|2057
9B4Z|1|BA|A|2058
9B4Z|1|BA|A|2059
9B4Z|1|BA|A|2060
9B4Z|1|BA|G|2061
9B4Z|1|BA|A|2062
9B4Z|1|BA|C|2063
9B4Z|1|BA|C|2064
*
9B4Z|1|BA|G|2446
9B4Z|1|BA|G|2447
9B4Z|1|BA|A|2448
9B4Z|1|BA|U|2449
9B4Z|1|BA|A|2450
9B4Z|1|BA|A|2451
9B4Z|1|BA|C|2452
9B4Z|1|BA|A|2453
*
9B4Z|1|BA|U|2500
9B4Z|1|BA|C|2501
9B4Z|1|BA|G|2502
9B4Z|1|BA|A|2503
9B4Z|1|BA|U|2504
9B4Z|1|BA|G|2505
9B4Z|1|BA|U|2506
9B4Z|1|BA|C|2507
*
9B4Z|1|BA|G|2582
9B4Z|1|BA|G|2583
9B4Z|1|BA|U|2584
9B4Z|1|BA|U|2585
9B4Z|1|BA|U|2586
9B4Z|1|BA|A|2587
9B4Z|1|BA|G|2588
*
9B4Z|1|BA|C|2606
9B4Z|1|BA|G|2607
9B4Z|1|BA|G|2608
9B4Z|1|BA|U|2609
9B4Z|1|BA|C|2610
9B4Z|1|BA|C|2611
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain AW
- Transfer RNA; tRNA
- Chain AX
- Transfer RNA; tRNA
- Chain B0
- 50S ribosomal protein L32
- Chain BC
- 50S ribosomal protein L2
- Chain BD
- 50S ribosomal protein L3
- Chain BE
- 50S ribosomal protein L4
- Chain BL
- 50S ribosomal protein L15
- Chain BM
- 50S ribosomal protein L16
- Chain BS
- 50S ribosomal protein L22
Coloring options: