J5_9B4Z_009
3D structure
- PDB id
- 9B4Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 9B4Z|1|BA|U|2076, 9B4Z|1|BA|G|2428, 9B4Z|1|BA|G|2429, 9B4Z|1|BA|A|2430, 9B4Z|1|BA|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9B4Z|1|BA|U|2074
9B4Z|1|BA|U|2075
9B4Z|1|BA|U|2076
9B4Z|1|BA|A|2077
*
9B4Z|1|BA|U|2243
9B4Z|1|BA|U|2244
9B4Z|1|BA|U|2245
9B4Z|1|BA|G|2246
*
9B4Z|1|BA|C|2258
9B4Z|1|BA|U|2259
*
9B4Z|1|BA|A|2281
9B4Z|1|BA|G|2282
*
9B4Z|1|BA|C|2427
9B4Z|1|BA|G|2428
9B4Z|1|BA|G|2429
9B4Z|1|BA|A|2430
9B4Z|1|BA|U|2431
9B4Z|1|BA|A|2432
9B4Z|1|BA|A|2433
9B4Z|1|BA|A|2434
9B4Z|1|BA|A|2435
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain AY
- Transfer RNA; tRNA
- Chain B1
- 50S ribosomal protein L33
- Chain B3
- 50S ribosomal protein L35
- Chain BC
- 50S ribosomal protein L2
- Chain BL
- 50S ribosomal protein L15
- Chain BW
- 50S ribosomal protein L27
- Chain BX
- 50S ribosomal protein L28
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