J5_9BDL_004

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUCGCUCG*CGGG*UG*CCG*CGACC

Length

22 nucleotides

Bulged bases

9BDL|1|A18S|G|126, 9BDL|1|A18S|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BDL|1|A18S|G|123
9BDL|1|A18S|U|124
9BDL|1|A18S|C|125
9BDL|1|A18S|G|126
9BDL|1|A18S|C|127
9BDL|1|A18S|U|128
9BDL|1|A18S|C|129
9BDL|1|A18S|G|130
*
9BDL|1|A18S|C|182
9BDL|1|A18S|G|183
9BDL|1|A18S|G|184
9BDL|1|A18S|G|185
*
9BDL|1|A18S|U|214
9BDL|1|A18S|G|215
*
9BDL|1|A18S|C|310
9BDL|1|A18S|C|311
9BDL|1|A18S|G|312
*
9BDL|1|A18S|C|337
9BDL|1|A18S|G|338
9BDL|1|A18S|A|339
9BDL|1|A18S|C|340
9BDL|1|A18S|C|341

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS04

40S ribosomal protein S4

Chain AS06

40S ribosomal protein S6

Chain AS08

40S ribosomal protein S8