J5_9BDL_006

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGAGUC*GGAC*GUUC*GCC*GCAGAUC

Length

24 nucleotides

Bulged bases

9BDL|1|A28S|C|2289, 9BDL|1|A28S|U|2350

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9BDL_006 not in the Motif Atlas

Homologous match to J5_8P9A_011

Geometric discrepancy: 0.0581

The information below is about J5_8P9A_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_08384.1

Basepair signature

cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

9BDL|1|A28S|G|1335
9BDL|1|A28S|G|1336
9BDL|1|A28S|A|1337
9BDL|1|A28S|G|1338
9BDL|1|A28S|U|1339
9BDL|1|A28S|C|1340
*
9BDL|1|A28S|G|1516
9BDL|1|A28S|G|1517
9BDL|1|A28S|A|1518
9BDL|1|A28S|C|1519
*
9BDL|1|A28S|G|1658
9BDL|1|A28S|U|1659
9BDL|1|A28S|U|1660
9BDL|1|A28S|C|1661
*
9BDL|1|A28S|G|2288
9BDL|1|A28S|C|2289
9BDL|1|A28S|C|2290
*
9BDL|1|A28S|G|2345
9BDL|1|A28S|C|2346
9BDL|1|A28S|A|2347
9BDL|1|A28S|G|2348
9BDL|1|A28S|A|2349
9BDL|1|A28S|U|2350
9BDL|1|A28S|C|2351

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A58S

5.8S ribosomal RNA; 5.8S rRNA

Chain AL04

60S ribosomal protein L4

Chain AL13

Large ribosomal subunit protein eL13

Chain AL15

60S ribosomal protein L15

Chain AL28

60S ribosomal protein L27a

Chain AL32

Large ribosomal subunit protein eL32

Chain ALNW

60S ribosomal protein L28