J5_9BDL_007

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCAAGCCGG*UG*UG*CGGACCAGG*CAC

Length

25 nucleotides

Bulged bases

9BDL|1|A28S|G|3620, 9BDL|1|A28S|G|3625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9BDL_007 not in the Motif Atlas

Homologous match to J5_8C3A_004

Geometric discrepancy: 0.1049

The information below is about J5_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BDL|1|A28S|G|2855
9BDL|1|A28S|C|2856
9BDL|1|A28S|A|2857
9BDL|1|A28S|A|2858
9BDL|1|A28S|G|2859
9BDL|1|A28S|C|2860
9BDL|1|A28S|C|2861
9BDL|1|A28S|G|2862
9BDL|1|A28S|G|2863
*
9BDL|1|A28S|U|2887
9BDL|1|A28S|G|2888
*
9BDL|1|A28S|U|3613
9BDL|1|A28S|G|3614
*
9BDL|1|A28S|C|3618
9BDL|1|A28S|G|3619
9BDL|1|A28S|G|3620
9BDL|1|A28S|A|3621
9BDL|1|A28S|C|3622
9BDL|1|A28S|C|3623
9BDL|1|A28S|A|3624
9BDL|1|A28S|G|3625
9BDL|1|A28S|G|3626
*
9BDL|1|A28S|C|3835
9BDL|1|A28S|A|3836
9BDL|1|A28S|C|3837

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A18S

Small subunit ribosomal RNA; SSU rRNA

Chain AL03

60S ribosomal protein L3

Chain AL19

60S ribosomal protein L19

Chain AL23

60S ribosomal protein L23

Chain AL24

Ribosomal protein L24