J5_9BDL_008
3D structure
- PDB id
- 9BDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 9BDL|1|A28S|A|3908, 9BDL|1|A28S|A|4394, 9BDL|1|A28S|G|4451, 9BDL|1|A28S|U|4555, 9BDL|1|A28S|U|4556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9BDL|1|A28S|A|3903
9BDL|1|A28S|G|3904
9BDL|1|A28S|A|3905
9BDL|1|A28S|A|3906
9BDL|1|A28S|G|3907
9BDL|1|A28S|A|3908
9BDL|1|A28S|C|3909
9BDL|1|A28S|C|3910
*
9BDL|1|A28S|G|4392
9BDL|1|A28S|G|4393
9BDL|1|A28S|A|4394
9BDL|1|A28S|U|4395
9BDL|1|A28S|A|4396
9BDL|1|A28S|A|4397
9BDL|1|A28S|C|4398
9BDL|1|A28S|U|4399
9BDL|1|A28S|G|4400
*
9BDL|1|A28S|C|4444
9BDL|1|A28S|U|4445
9BDL|1|A28S|U|4446
9BDL|1|A28S|C|4447
9BDL|1|A28S|G|4448
9BDL|1|A28S|A|4449
9BDL|1|A28S|U|4450
9BDL|1|A28S|G|4451
9BDL|1|A28S|U|4452
9BDL|1|A28S|C|4453
*
9BDL|1|A28S|G|4528
9BDL|1|A28S|G|4529
9BDL|1|A28S|U|4530
9BDL|1|A28S|U|4531
9BDL|1|A28S|U|4532
9BDL|1|A28S|A|4533
9BDL|1|A28S|G|4534
*
9BDL|1|A28S|U|4552
9BDL|1|A28S|A|4553
9BDL|1|A28S|G|4554
9BDL|1|A28S|U|4555
9BDL|1|A28S|U|4556
9BDL|1|A28S|U|4557
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain AL02
- 60S ribosomal protein L8
- Chain AL03
- 60S ribosomal protein L3
- Chain AL04
- 60S ribosomal protein L4
- Chain AL28
- 60S ribosomal protein L27a
- Chain AL29
- Large ribosomal subunit protein eL29
- Chain PTRN
- Transfer RNA; tRNA
Coloring options: