J5_9BDN_003
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CACAU*AAGGCAG
- Length
- 27 nucleotides
- Bulged bases
- 9BDN|1|A18S|A|92, 9BDN|1|A18S|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9BDN|1|A18S|C|53
9BDN|1|A18S|A|54
9BDN|1|A18S|U|55
9BDN|1|A18S|G|56
*
9BDN|1|A18S|C|89
9BDN|1|A18S|G|90
9BDN|1|A18S|A|91
9BDN|1|A18S|A|92
9BDN|1|A18S|U|93
9BDN|1|A18S|G|94
9BDN|1|A18S|G|95
9BDN|1|A18S|C|96
*
9BDN|1|A18S|G|434
9BDN|1|A18S|A|435
9BDN|1|A18S|G|436
*
9BDN|1|A18S|C|457
9BDN|1|A18S|A|458
9BDN|1|A18S|C|459
9BDN|1|A18S|A|460
9BDN|1|A18S|U|461
*
9BDN|1|A18S|A|468
9BDN|1|A18S|A|469
9BDN|1|A18S|G|470
9BDN|1|A18S|G|471
9BDN|1|A18S|C|472
9BDN|1|A18S|A|473
9BDN|1|A18S|G|474
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AL23
- 60S ribosomal protein L23
- Chain AS04
- 40S ribosomal protein S4
- Chain AS06
- 40S ribosomal protein S6
- Chain AS08
- 40S ribosomal protein S8
- Chain AS09
- 40S ribosomal protein S9
- Chain AS24
- 40S ribosomal protein S24
Coloring options: