J5_9BDN_005
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GCC*GCAGAUC
- Length
- 24 nucleotides
- Bulged bases
- 9BDN|1|A28S|C|2289, 9BDN|1|A28S|U|2350
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9BDN_005 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0645
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9BDN|1|A28S|G|1335
9BDN|1|A28S|G|1336
9BDN|1|A28S|A|1337
9BDN|1|A28S|G|1338
9BDN|1|A28S|U|1339
9BDN|1|A28S|C|1340
*
9BDN|1|A28S|G|1516
9BDN|1|A28S|G|1517
9BDN|1|A28S|A|1518
9BDN|1|A28S|C|1519
*
9BDN|1|A28S|G|1658
9BDN|1|A28S|U|1659
9BDN|1|A28S|U|1660
9BDN|1|A28S|C|1661
*
9BDN|1|A28S|G|2288
9BDN|1|A28S|C|2289
9BDN|1|A28S|C|2290
*
9BDN|1|A28S|G|2345
9BDN|1|A28S|C|2346
9BDN|1|A28S|A|2347
9BDN|1|A28S|G|2348
9BDN|1|A28S|A|2349
9BDN|1|A28S|U|2350
9BDN|1|A28S|C|2351
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain A58S
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AL04
- 60S ribosomal protein L4
- Chain AL13
- Large ribosomal subunit protein eL13
- Chain AL15
- 60S ribosomal protein L15
- Chain AL28
- 60S ribosomal protein L27a
- Chain AL32
- Large ribosomal subunit protein eL32
- Chain ALNW
- 60S ribosomal protein L28
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