J5_9BDN_006

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCAAGCCGG*UG*UG*CGGACCAGG*CAC

Length

25 nucleotides

Bulged bases

9BDN|1|A28S|G|3620

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9BDN_006 not in the Motif Atlas

Homologous match to J5_8C3A_004

Geometric discrepancy: 0.1099

The information below is about J5_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BDN|1|A28S|G|2855
9BDN|1|A28S|C|2856
9BDN|1|A28S|A|2857
9BDN|1|A28S|A|2858
9BDN|1|A28S|G|2859
9BDN|1|A28S|C|2860
9BDN|1|A28S|C|2861
9BDN|1|A28S|G|2862
9BDN|1|A28S|G|2863
*
9BDN|1|A28S|U|2887
9BDN|1|A28S|G|2888
*
9BDN|1|A28S|U|3613
9BDN|1|A28S|G|3614
*
9BDN|1|A28S|C|3618
9BDN|1|A28S|G|3619
9BDN|1|A28S|G|3620
9BDN|1|A28S|A|3621
9BDN|1|A28S|C|3622
9BDN|1|A28S|C|3623
9BDN|1|A28S|A|3624
9BDN|1|A28S|G|3625
9BDN|1|A28S|G|3626
*
9BDN|1|A28S|C|3835
9BDN|1|A28S|A|3836
9BDN|1|A28S|C|3837

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A18S

Small subunit ribosomal RNA; SSU rRNA

Chain AL03

60S ribosomal protein L3

Chain AL19

60S ribosomal protein L19

Chain AL23

60S ribosomal protein L23

Chain AL24

Ribosomal protein L24