Loop J5_9BDP

3D structure

PDB id: 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
Description: 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.7 Å

Loop

Sequence: CUUGU*AAAUAAC*GGAAUGAGUCCA*UUAACGAGGAUCCAU*AUAG
Length: 43 nucleotides
Bulged bases: None detected
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9BDP|1|A18S|C|30
9BDP|1|A18S|U|31
9BDP|1|A18S|U|32
9BDP|1|A18S|G|33
9BDP|1|A18S|U|34
*
9BDP|1|A18S|A|521
9BDP|1|A18S|A|522
9BDP|1|A18S|A|523
9BDP|1|A18S|U|524
9BDP|1|A18S|A|525
9BDP|1|A18S|A|526
9BDP|1|A18S|C|527
*
9BDP|1|A18S|G|558
9BDP|1|A18S|G|559
9BDP|1|A18S|A|560
9BDP|1|A18S|A|561
9BDP|1|A18S|U|562
9BDP|1|A18S|G|563
9BDP|1|A18S|A|564
9BDP|1|A18S|G|565
9BDP|1|A18S|U|566
9BDP|1|A18S|C|567
9BDP|1|A18S|C|568
9BDP|1|A18S|A|569
*
9BDP|1|A18S|U|581
9BDP|1|A18S|U|582
9BDP|1|A18S|A|583
9BDP|1|A18S|A|584
9BDP|1|A18S|C|585
9BDP|1|A18S|G|586
9BDP|1|A18S|A|587
9BDP|1|A18S|G|588
9BDP|1|A18S|G|589
9BDP|1|A18S|A|590
9BDP|1|A18S|U|591
9BDP|1|A18S|C|592
9BDP|1|A18S|C|593
9BDP|1|A18S|A|594
9BDP|1|A18S|U|595
*
9BDP|1|A18S|A|641
9BDP|1|A18S|U|642
9BDP|1|A18S|A|643
9BDP|1|A18S|G|644

Current chains

Chain A18S: 18S rRNA

Nearby chains

Chain AS09: 40S ribosomal protein S9
Chain AS23: 40S ribosomal protein S23
Chain AS24: 40S ribosomal protein S24
Chain AS30: 40S ribosomal protein S30

J5_9BDP_001