J5_9BDP_002
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CACAU*AAGGCAG
- Length
- 27 nucleotides
- Bulged bases
- 9BDP|1|A18S|U|55, 9BDP|1|A18S|A|92, 9BDP|1|A18S|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9BDP|1|A18S|C|53
9BDP|1|A18S|A|54
9BDP|1|A18S|U|55
9BDP|1|A18S|G|56
*
9BDP|1|A18S|C|89
9BDP|1|A18S|G|90
9BDP|1|A18S|A|91
9BDP|1|A18S|A|92
9BDP|1|A18S|U|93
9BDP|1|A18S|G|94
9BDP|1|A18S|G|95
9BDP|1|A18S|C|96
*
9BDP|1|A18S|G|434
9BDP|1|A18S|A|435
9BDP|1|A18S|G|436
*
9BDP|1|A18S|C|457
9BDP|1|A18S|A|458
9BDP|1|A18S|C|459
9BDP|1|A18S|A|460
9BDP|1|A18S|U|461
*
9BDP|1|A18S|A|468
9BDP|1|A18S|A|469
9BDP|1|A18S|G|470
9BDP|1|A18S|G|471
9BDP|1|A18S|C|472
9BDP|1|A18S|A|473
9BDP|1|A18S|G|474
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AL23
- 60S ribosomal protein L23
- Chain AS04
- 40S ribosomal protein S4
- Chain AS06
- 40S ribosomal protein S6
- Chain AS08
- 40S ribosomal protein S8
- Chain AS09
- 40S ribosomal protein S9
- Chain AS24
- 40S ribosomal protein S24
Coloring options: