J5_9BDP_005
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GCAAGCCGG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 9BDP|1|A28S|G|3620, 9BDP|1|A28S|G|3625
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9BDP_005 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.1249
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9BDP|1|A28S|G|2855
9BDP|1|A28S|C|2856
9BDP|1|A28S|A|2857
9BDP|1|A28S|A|2858
9BDP|1|A28S|G|2859
9BDP|1|A28S|C|2860
9BDP|1|A28S|C|2861
9BDP|1|A28S|G|2862
9BDP|1|A28S|G|2863
*
9BDP|1|A28S|U|2887
9BDP|1|A28S|G|2888
*
9BDP|1|A28S|U|3613
9BDP|1|A28S|G|3614
*
9BDP|1|A28S|C|3618
9BDP|1|A28S|G|3619
9BDP|1|A28S|G|3620
9BDP|1|A28S|A|3621
9BDP|1|A28S|C|3622
9BDP|1|A28S|C|3623
9BDP|1|A28S|A|3624
9BDP|1|A28S|G|3625
9BDP|1|A28S|G|3626
*
9BDP|1|A28S|C|3835
9BDP|1|A28S|A|3836
9BDP|1|A28S|C|3837
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain A18S
- Small subunit ribosomal RNA; SSU rRNA
- Chain AL03
- 60S ribosomal protein L3
- Chain AL19
- 60S ribosomal protein L19
- Chain AL23
- 60S ribosomal protein L23
- Chain AL24
- Ribosomal protein L24
Coloring options: