J5_9BDP_006
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- AGAAGACCC*GGGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 42 nucleotides
- Bulged bases
- 9BDP|1|A28S|A|3908, 9BDP|1|A28S|A|4394, 9BDP|1|A28S|G|4451, 9BDP|1|A28S|U|4452, 9BDP|1|A28S|U|4555, 9BDP|1|A28S|U|4556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9BDP|1|A28S|A|3903
9BDP|1|A28S|G|3904
9BDP|1|A28S|A|3905
9BDP|1|A28S|A|3906
9BDP|1|A28S|G|3907
9BDP|1|A28S|A|3908
9BDP|1|A28S|C|3909
9BDP|1|A28S|C|3910
9BDP|1|A28S|C|3911
*
9BDP|1|A28S|G|4391
9BDP|1|A28S|G|4392
9BDP|1|A28S|G|4393
9BDP|1|A28S|A|4394
9BDP|1|A28S|U|4395
9BDP|1|A28S|A|4396
9BDP|1|A28S|A|4397
9BDP|1|A28S|C|4398
9BDP|1|A28S|U|4399
9BDP|1|A28S|G|4400
*
9BDP|1|A28S|C|4444
9BDP|1|A28S|U|4445
9BDP|1|A28S|U|4446
9BDP|1|A28S|C|4447
9BDP|1|A28S|G|4448
9BDP|1|A28S|A|4449
9BDP|1|A28S|U|4450
9BDP|1|A28S|G|4451
9BDP|1|A28S|U|4452
9BDP|1|A28S|C|4453
*
9BDP|1|A28S|G|4528
9BDP|1|A28S|G|4529
9BDP|1|A28S|U|4530
9BDP|1|A28S|U|4531
9BDP|1|A28S|U|4532
9BDP|1|A28S|A|4533
9BDP|1|A28S|G|4534
*
9BDP|1|A28S|U|4552
9BDP|1|A28S|A|4553
9BDP|1|A28S|G|4554
9BDP|1|A28S|U|4555
9BDP|1|A28S|U|4556
9BDP|1|A28S|U|4557
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain AL02
- 60S ribosomal protein L8
- Chain AL03
- 60S ribosomal protein L3
- Chain AL04
- 60S ribosomal protein L4
- Chain AL10
- Ribosomal protein L10
- Chain AL28
- 60S ribosomal protein L27a
- Chain AL29
- Large ribosomal subunit protein eL29
- Chain PTRN
- Transfer RNA; tRNA
Coloring options: