J5_9BKD_004

3D structure

PDB id

9BKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

9BKD|1|A|G|126, 9BKD|1|A|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BKD|1|A|G|123
9BKD|1|A|U|124
9BKD|1|A|C|125
9BKD|1|A|G|126
9BKD|1|A|C|127
9BKD|1|A|U|128
9BKD|1|A|C|129
*
9BKD|1|A|G|183
9BKD|1|A|G|184
9BKD|1|A|G|185
*
9BKD|1|A|U|214
9BKD|1|A|G|215
*
9BKD|1|A|C|310
9BKD|1|A|C|311
9BKD|1|A|G|312
*
9BKD|1|A|C|337
9BKD|1|A|G|338
9BKD|1|A|A|339
9BKD|1|A|C|340
9BKD|1|A|C|341

Current chains

Chain A

18S rRNA

Nearby chains

Chain C

Small ribosomal subunit protein eS4, X isoform

Chain R

Small ribosomal subunit protein eS8

Chain S

Small ribosomal subunit protein eS6