J5_9BS0_001

3D structure

PDB id

9BS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

YphC-treated 45SYphC particle. Class 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAUC*GAAG

Length

24 nucleotides

Bulged bases

9BS0|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BS0|1|A|C|47
9BS0|1|A|G|48
9BS0|1|A|A|49
9BS0|1|A|U|50
9BS0|1|A|G|51
9BS0|1|A|A|52
9BS0|1|A|A|53
9BS0|1|A|G|54
*
9BS0|1|A|C|115
9BS0|1|A|G|116
9BS0|1|A|A|117
9BS0|1|A|A|118
9BS0|1|A|U|119
9BS0|1|A|G|120
*
9BS0|1|A|C|129
9BS0|1|A|A|130
*
9BS0|1|A|U|149
9BS0|1|A|A|150
9BS0|1|A|U|151
9BS0|1|A|C|152
*
9BS0|1|A|G|177
9BS0|1|A|A|178
9BS0|1|A|A|179
9BS0|1|A|G|180

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

Large ribosomal subunit protein bL34