J5_9BSS_002

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAAAC*GGGUUGUAG*CUGAGUAC*GGAAUCCG*CAAG

Length

35 nucleotides

Bulged bases

9BSS|1|A|U|301, 9BSS|1|A|G|417, 9BSS|1|A|C|452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BSS|1|A|C|271
9BSS|1|A|C|272
9BSS|1|A|A|273
9BSS|1|A|A|274
9BSS|1|A|A|275
9BSS|1|A|C|276
*
9BSS|1|A|G|295
9BSS|1|A|G|296
9BSS|1|A|G|297
9BSS|1|A|U|298
9BSS|1|A|U|299
9BSS|1|A|G|300
9BSS|1|A|U|301
9BSS|1|A|A|302
9BSS|1|A|G|303
*
9BSS|1|A|C|415
9BSS|1|A|U|416
9BSS|1|A|G|417
9BSS|1|A|A|418
9BSS|1|A|G|419
9BSS|1|A|U|420
9BSS|1|A|A|421
9BSS|1|A|C|422
*
9BSS|1|A|G|446
9BSS|1|A|G|447
9BSS|1|A|A|448
9BSS|1|A|A|449
9BSS|1|A|U|450
9BSS|1|A|C|451
9BSS|1|A|C|452
9BSS|1|A|G|453
*
9BSS|1|A|C|468
9BSS|1|A|A|469
9BSS|1|A|A|470
9BSS|1|A|G|471

Current chains

Chain A

23S rRNA

Nearby chains