J5_9BSS_004
3D structure
- PDB id
- 9BSS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 45SRbgA particle in complex with RbgA and YphC. Class B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAGUU*AGAC*GUUC*GC*GAGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 9BSS|1|A|U|1295
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9BSS_004 not in the Motif Atlas
- Homologous match to J5_4WF9_004
- Geometric discrepancy: 0.1271
- The information below is about J5_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9BSS|1|A|C|628
9BSS|1|A|G|629
9BSS|1|A|A|630
9BSS|1|A|G|631
9BSS|1|A|U|632
9BSS|1|A|U|633
*
9BSS|1|A|A|715
9BSS|1|A|G|716
9BSS|1|A|A|717
9BSS|1|A|C|718
*
9BSS|1|A|G|856
9BSS|1|A|U|857
9BSS|1|A|U|858
9BSS|1|A|C|859
*
9BSS|1|A|G|1236
9BSS|1|A|C|1237
*
9BSS|1|A|G|1290
9BSS|1|A|A|1291
9BSS|1|A|G|1292
9BSS|1|A|A|1293
9BSS|1|A|A|1294
9BSS|1|A|U|1295
9BSS|1|A|G|1296
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL4
- Chain I
- Large ribosomal subunit protein uL15
- Chain L
- Large ribosomal subunit protein bL20
- Chain M
- Large ribosomal subunit protein bL21
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