J5_9C8K_001
3D structure
- PDB id
- 9C8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG
- Length
- 35 nucleotides
- Bulged bases
- 9C8K|1|1|A|590, 9C8K|1|1|C|593
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9C8K|1|1|C|30
9C8K|1|1|U|31
9C8K|1|1|U|32
9C8K|1|1|G|33
9C8K|1|1|U|34
*
9C8K|1|1|A|521
9C8K|1|1|A|522
9C8K|1|1|A|523
9C8K|1|1|U|524
9C8K|1|1|A|525
9C8K|1|1|A|526
9C8K|1|1|C|527
*
9C8K|1|1|G|558
9C8K|1|1|G|559
9C8K|1|1|A|560
9C8K|1|1|A|561
9C8K|1|1|U|562
9C8K|1|1|G|563
9C8K|1|1|A|564
9C8K|1|1|G|565
*
9C8K|1|1|C|585
9C8K|1|1|G|586
9C8K|1|1|A|587
9C8K|1|1|G|588
9C8K|1|1|G|589
9C8K|1|1|A|590
9C8K|1|1|U|591
9C8K|1|1|C|592
9C8K|1|1|C|593
9C8K|1|1|A|594
9C8K|1|1|U|595
*
9C8K|1|1|A|641
9C8K|1|1|U|642
9C8K|1|1|A|643
9C8K|1|1|G|644
Current chains
- Chain 1
- 18S ribosomal RNA
Nearby chains
- Chain J
- uS4
- Chain X
- uS12
- Chain e
- 40S ribosomal protein eS30
Coloring options: