J5_9C8K_002
3D structure
- PDB id
- 9C8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUGUCUAAG*CUGCGAAUGGCU*AGAG*CACAU*AAGGCAG
- Length
- 38 nucleotides
- Bulged bases
- 9C8K|1|1|C|58, 9C8K|1|1|U|59, 9C8K|1|1|A|92, 9C8K|1|1|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9C8K|1|1|C|53
9C8K|1|1|A|54
9C8K|1|1|U|55
9C8K|1|1|G|56
9C8K|1|1|U|57
9C8K|1|1|C|58
9C8K|1|1|U|59
9C8K|1|1|A|60
9C8K|1|1|A|61
9C8K|1|1|G|62
*
9C8K|1|1|C|86
9C8K|1|1|U|87
9C8K|1|1|G|88
9C8K|1|1|C|89
9C8K|1|1|G|90
9C8K|1|1|A|91
9C8K|1|1|A|92
9C8K|1|1|U|93
9C8K|1|1|G|94
9C8K|1|1|G|95
9C8K|1|1|C|96
9C8K|1|1|U|97
*
9C8K|1|1|A|433
9C8K|1|1|G|434
9C8K|1|1|A|435
9C8K|1|1|G|436
*
9C8K|1|1|C|457
9C8K|1|1|A|458
9C8K|1|1|C|459
9C8K|1|1|A|460
9C8K|1|1|U|461
*
9C8K|1|1|A|468
9C8K|1|1|A|469
9C8K|1|1|G|470
9C8K|1|1|G|471
9C8K|1|1|C|472
9C8K|1|1|A|473
9C8K|1|1|G|474
Current chains
- Chain 1
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein eS4
- Chain G
- eS6
- Chain I
- eS8
- Chain J
- uS4
- Chain Y
- Small ribosomal subunit protein eS24
Coloring options: