J5_9C8K_003
3D structure
- PDB id
- 9C8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUCUUGG*CCCUUGC*GCGUU*AUGGAAUAGGACC*GCCAUGAU
- Length
- 40 nucleotides
- Bulged bases
- 9C8K|1|1|C|687, 9C8K|1|1|C|741, 9C8K|1|1|C|797, 9C8K|1|1|G|798, 9C8K|1|1|U|871, 9C8K|1|1|G|873, 9C8K|1|1|A|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9C8K|1|1|A|685
9C8K|1|1|U|686
9C8K|1|1|C|687
9C8K|1|1|U|688
9C8K|1|1|U|689
9C8K|1|1|G|690
9C8K|1|1|G|691
*
9C8K|1|1|C|739
9C8K|1|1|C|740
9C8K|1|1|C|741
9C8K|1|1|U|742
9C8K|1|1|U|743
9C8K|1|1|G|744
9C8K|1|1|C|745
*
9C8K|1|1|G|796
9C8K|1|1|C|797
9C8K|1|1|G|798
9C8K|1|1|U|799
9C8K|1|1|U|800
*
9C8K|1|1|A|865
9C8K|1|1|U|866
9C8K|1|1|G|867
9C8K|1|1|G|868
9C8K|1|1|A|869
9C8K|1|1|A|870
9C8K|1|1|U|871
9C8K|1|1|A|872
9C8K|1|1|G|873
9C8K|1|1|G|874
9C8K|1|1|A|875
9C8K|1|1|C|876
9C8K|1|1|C|877
*
9C8K|1|1|G|910
9C8K|1|1|C|911
9C8K|1|1|C|912
9C8K|1|1|A|913
9C8K|1|1|U|914
9C8K|1|1|G|915
9C8K|1|1|A|916
9C8K|1|1|U|917
Current chains
- Chain 1
- 18S ribosomal RNA
Nearby chains
- Chain H
- eS7
- Chain L
- uS17
- Chain N
- uS15
- Chain W
- uS8
- Chain X
- uS12
Coloring options: