J5_9CG7_004

3D structure

PDB id

9CG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + AUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

9CG7|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9CG7_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0499

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9CG7|1|a|C|47
9CG7|1|a|G|48
9CG7|1|a|A|49
9CG7|1|a|U|50
9CG7|1|a|G|51
9CG7|1|a|A|52
9CG7|1|a|A|53
9CG7|1|a|G|54
*
9CG7|1|a|C|116
9CG7|1|a|G|117
9CG7|1|a|A|118
9CG7|1|a|A|119
9CG7|1|a|U|120
9CG7|1|a|G|121
*
9CG7|1|a|C|130
9CG7|1|a|A|131
*
9CG7|1|a|U|148
9CG7|1|a|A|149
9CG7|1|a|U|150
*
9CG7|1|a|A|176
9CG7|1|a|G|177
9CG7|1|a|G|178

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34