J5_9D0I_008
3D structure
- PDB id
- 9D0I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.45 Å
Loop
- Sequence
- CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9D0I|1|1a|C|36
9D0I|1|1a|U|37
9D0I|1|1a|G|38
9D0I|1|1a|G|39
*
9D0I|1|1a|C|403
9D0I|1|1a|U|404
9D0I|1|1a|U|405
9D0I|1|1a|G|406
*
9D0I|1|1a|C|436
9D0I|1|1a|U|437
9D0I|1|1a|G|438
9D0I|1|1a|A|439
9D0I|1|1a|A|441
9D0I|1|1a|C|442
*
9D0I|1|1a|G|492
9D0I|1|1a|G|493
9D0I|1|1a|U|494
9D0I|1|1a|A|495
9D0I|1|1a|A|496
9D0I|1|1a|U|498
9D0I|1|1a|A|499
9D0I|1|1a|G|500
*
9D0I|1|1a|C|545
9D0I|1|1a|G|546
9D0I|1|1a|A|547
9D0I|1|1a|G|548
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1d
- 30S ribosomal protein S4
- Chain 1l
- 30S ribosomal protein S12
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