J5_9D0I_015

3D structure

PDB id

9D0I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

GCAAGUUGG*UG*CC*GUGAACAGG*CGC

Length

25 nucleotides

Bulged bases

9D0I|1|2A|G|1758, 9D0I|1|2A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9D0I|1|2A|G|1674
9D0I|1|2A|C|1675
9D0I|1|2A|A|1676
9D0I|1|2A|A|1677
9D0I|1|2A|G|1678
9D0I|1|2A|U|1679
9D0I|1|2A|U|1680
9D0I|1|2A|G|1681
9D0I|1|2A|G|1682
*
9D0I|1|2A|U|1706
9D0I|1|2A|G|1707
*
9D0I|1|2A|C|1751
9D0I|1|2A|C|1752
*
9D0I|1|2A|G|1756
9D0I|1|2A|U|1757
9D0I|1|2A|G|1758
9D0I|1|2A|A|1759
9D0I|1|2A|A|1760
9D0I|1|2A|C|1761
9D0I|1|2A|A|1762
9D0I|1|2A|G|1763
9D0I|1|2A|G|1764
*
9D0I|1|2A|C|1988
9D0I|1|2A|G|1989
9D0I|1|2A|C|1990

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2O

50S ribosomal protein L14

Chain 2T

50S ribosomal protein L19

Chain 2a

Small subunit ribosomal RNA; SSU rRNA