J5_9D0I_017
3D structure
- PDB id
- 9D0I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Se-cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.45A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.45 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 9D0I|1|2A|U|2076, 9D0I|1|2A|G|2428, 9D0I|1|2A|G|2429, 9D0I|1|2A|A|2430, 9D0I|1|2A|U|2431, 9D0I|1|2A|A|2434
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9D0I|1|2A|U|2074
9D0I|1|2A|U|2075
9D0I|1|2A|U|2076
9D0I|1|2A|A|2077
*
9D0I|1|2A|U|2243
9D0I|1|2A|U|2244
9D0I|1|2A|U|2245
9D0I|1|2A|G|2246
*
9D0I|1|2A|C|2258
9D0I|1|2A|G|2259
*
9D0I|1|2A|C|2281
9D0I|1|2A|G|2282
*
9D0I|1|2A|C|2427
9D0I|1|2A|G|2428
9D0I|1|2A|G|2429
9D0I|1|2A|A|2430
9D0I|1|2A|U|2431
9D0I|1|2A|A|2432
9D0I|1|2A|A|2433
9D0I|1|2A|A|2434
9D0I|1|2A|A|2435
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 20
- 50S ribosomal protein L27
- Chain 21
- 50S ribosomal protein L28
- Chain 26
- 50S ribosomal protein L33
- Chain 2D
- 50S ribosomal protein L2
- Chain 2P
- 50S ribosomal protein L15
- Chain 2y
- Transfer RNA; tRNA
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