J5_9D7S_014

3D structure

PDB id

9D7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with Api antimicrobial peptide, mRNA, A-site release factor 1, and deacylated P-site and E-site tRNAphe at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

9D7S|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9D7S|1|2A|C|601
9D7S|1|2A|G|602
9D7S|1|2A|A|603
9D7S|1|2A|G|604
*
9D7S|1|2A|C|624
9D7S|1|2A|G|625
9D7S|1|2A|U|626
9D7S|1|2A|A|627
9D7S|1|2A|G|628
*
9D7S|1|2A|C|635
9D7S|1|2A|G|636
9D7S|1|2A|A|637
9D7S|1|2A|G|638
*
9D7S|1|2A|C|650
9D7S|1|2A|G|651
9D7S|1|2A|C|652
9D7S|1|2A|A|652|||A
9D7S|1|2A|A|652|||B
9D7S|1|2A|G|652|||C
*
9D7S|1|2A|C|652|||V
9D7S|1|2A|A|653
9D7S|1|2A|A|654
9D7S|1|2A|A|655
9D7S|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15