J5_9DFD_014

3D structure

PDB id

9DFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

9DFD|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DFD|1|2A|C|601
9DFD|1|2A|G|602
9DFD|1|2A|A|603
9DFD|1|2A|G|604
*
9DFD|1|2A|C|624
9DFD|1|2A|G|625
9DFD|1|2A|U|626
9DFD|1|2A|A|627
9DFD|1|2A|G|628
*
9DFD|1|2A|C|635
9DFD|1|2A|G|636
9DFD|1|2A|A|637
9DFD|1|2A|G|638
*
9DFD|1|2A|C|650
9DFD|1|2A|G|651
9DFD|1|2A|C|652
9DFD|1|2A|A|652|||A
9DFD|1|2A|A|652|||B
9DFD|1|2A|G|652|||C
*
9DFD|1|2A|C|652|||V
9DFD|1|2A|A|653
9DFD|1|2A|A|654
9DFD|1|2A|A|655
9DFD|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15