J5_9DFD_016
3D structure
- PDB id
- 9DFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- AAAAGACC*GGAUAACA*UCG(2MA)UGUC*GGUUCAG*CGGUCU
- Length
- 37 nucleotides
- Bulged bases
- 9DFD|1|2A|A|2448, 9DFD|1|2A|U|2449, 9DFD|1|2A|U|2609
- QA status
- Modified nucleotides: 2MA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9DFD|1|2A|A|2057
9DFD|1|2A|A|2058
9DFD|1|2A|A|2059
9DFD|1|2A|A|2060
9DFD|1|2A|G|2061
9DFD|1|2A|A|2062
9DFD|1|2A|C|2063
9DFD|1|2A|C|2064
*
9DFD|1|2A|G|2446
9DFD|1|2A|G|2447
9DFD|1|2A|A|2448
9DFD|1|2A|U|2449
9DFD|1|2A|A|2450
9DFD|1|2A|A|2451
9DFD|1|2A|C|2452
9DFD|1|2A|A|2453
*
9DFD|1|2A|U|2500
9DFD|1|2A|C|2501
9DFD|1|2A|G|2502
9DFD|1|2A|2MA|2503
9DFD|1|2A|U|2504
9DFD|1|2A|G|2505
9DFD|1|2A|U|2506
9DFD|1|2A|C|2507
*
9DFD|1|2A|G|2582
9DFD|1|2A|G|2583
9DFD|1|2A|U|2584
9DFD|1|2A|U|2585
9DFD|1|2A|C|2586
9DFD|1|2A|A|2587
9DFD|1|2A|G|2588
*
9DFD|1|2A|C|2606
9DFD|1|2A|G|2607
9DFD|1|2A|G|2608
9DFD|1|2A|U|2609
9DFD|1|2A|C|2610
9DFD|1|2A|U|2611
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 20
- 50S ribosomal protein L27
- Chain 25
- 50S ribosomal protein L32
- Chain 2D
- 50S ribosomal protein L2
- Chain 2E
- 50S ribosomal protein L3
- Chain 2F
- 50S ribosomal protein L4
- Chain 2P
- 50S ribosomal protein L15
- Chain 2Q
- 50S ribosomal protein L16
- Chain 2w
- Transfer RNA; tRNA
- Chain 2x
- Transfer RNA; tRNA
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