J5_9DP7_002
3D structure
- PDB id
- 9DP7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GGAGU(OMC)*GGAC*GUUC*GC*GCAGAU(OMC)
- Length
- 23 nucleotides
- Bulged bases
- 9DP7|1|A1|U|1436
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9DP7|1|A1|G|658
9DP7|1|A1|G|659
9DP7|1|A1|A|660
9DP7|1|A1|G|661
9DP7|1|A1|U|662
9DP7|1|A1|OMC|663
*
9DP7|1|A1|G|799
9DP7|1|A1|G|800
9DP7|1|A1|A|801
9DP7|1|A1|C|802
*
9DP7|1|A1|G|941
9DP7|1|A1|U|942
9DP7|1|A1|U|943
9DP7|1|A1|C|944
*
9DP7|1|A1|G|1375
9DP7|1|A1|C|1376
*
9DP7|1|A1|G|1431
9DP7|1|A1|C|1432
9DP7|1|A1|A|1433
9DP7|1|A1|G|1434
9DP7|1|A1|A|1435
9DP7|1|A1|U|1436
9DP7|1|A1|OMC|1437
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AC
- Large ribosomal subunit protein uL4A
- Chain AL
- 60S ribosomal protein L13-A
- Chain AN
- 60S ribosomal protein L15-A
- Chain Aa
- 60S ribosomal protein L28
- Chain Ae
- Large ribosomal subunit protein eL32
Coloring options: