J5_9DP7_003
3D structure
- PDB id
- 9DP7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 9DP7|1|A1|U|719, 9DP7|1|A1|A|784, 9DP7|1|A1|G|785
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9DP7|1|A1|C|675
9DP7|1|A1|G|676
9DP7|1|A1|A|677
9DP7|1|A1|G|678
*
9DP7|1|A1|C|702
9DP7|1|A1|G|703
9DP7|1|A1|U|704
9DP7|1|A1|A|705
9DP7|1|A1|A|706
*
9DP7|1|A1|U|713
9DP7|1|A1|G|714
9DP7|1|A1|A|715
9DP7|1|A1|A|716
9DP7|1|A1|C|717
9DP7|1|A1|G|718
9DP7|1|A1|U|719
9DP7|1|A1|A|720
9DP7|1|A1|G|721
*
9DP7|1|A1|C|749
9DP7|1|A1|G|750
9DP7|1|A1|A|751
*
9DP7|1|A1|U|782
9DP7|1|A1|A|783
9DP7|1|A1|A|784
9DP7|1|A1|G|785
9DP7|1|A1|A|786
9DP7|1|A1|G|787
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AC
- Large ribosomal subunit protein uL4A
- Chain AL
- 60S ribosomal protein L13-A
- Chain AQ
- 60S ribosomal protein L18-A
- Chain Aa
- 60S ribosomal protein L28
- Chain Ab
- Large ribosomal subunit protein eL29
- Chain Ai
- 60S ribosomal protein L36-A
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