Loop J5_9DP7

3D structure

PDB id: 9DP7 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.38 Å

Loop

Sequence: CUUGU*AAAUAACGAUAC*GUAAUUGGAAUGAG*CGAGG(A2M)ACAAU*AUAG
Length: 46 nucleotides
Bulged bases: 9DP7|1|B5|A|506
QA status: Modified nucleotides: A2M

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9DP7|1|B5|C|31
9DP7|1|B5|U|32
9DP7|1|B5|U|33
9DP7|1|B5|G|34
9DP7|1|B5|U|35
*
9DP7|1|B5|A|473
9DP7|1|B5|A|474
9DP7|1|B5|A|475
9DP7|1|B5|U|476
9DP7|1|B5|A|477
9DP7|1|B5|A|478
9DP7|1|B5|C|479
9DP7|1|B5|G|480
9DP7|1|B5|A|481
9DP7|1|B5|U|482
9DP7|1|B5|A|483
9DP7|1|B5|C|484
*
9DP7|1|B5|G|503
9DP7|1|B5|U|504
9DP7|1|B5|A|505
9DP7|1|B5|A|506
9DP7|1|B5|U|507
9DP7|1|B5|U|508
9DP7|1|B5|G|509
9DP7|1|B5|G|510
9DP7|1|B5|A|511
9DP7|1|B5|A|512
9DP7|1|B5|U|513
9DP7|1|B5|G|514
9DP7|1|B5|A|515
9DP7|1|B5|G|516
*
9DP7|1|B5|C|536
9DP7|1|B5|G|537
9DP7|1|B5|A|538
9DP7|1|B5|G|539
9DP7|1|B5|G|540
9DP7|1|B5|A2M|541
9DP7|1|B5|A|542
9DP7|1|B5|C|543
9DP7|1|B5|A|544
9DP7|1|B5|A|545
9DP7|1|B5|U|546
*
9DP7|1|B5|A|592
9DP7|1|B5|U|593
9DP7|1|B5|A|594
9DP7|1|B5|G|595

Current chains

Chain B5: 18S rRNA

Nearby chains

Chain BJ: 40S ribosomal protein S9-A
Chain BX: 40S ribosomal protein S23-A
Chain Be: 40S ribosomal protein S30-A

J5_9DP7_007