J5_9DP7_011
3D structure
- PDB id
- 9DP7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- ACUUUG*UUUCCUUC*GGACUUU*AUAGAAUAGGACGUUUGG*CCAUCGUAAUGAU
- Length
- 52 nucleotides
- Bulged bases
- 9DP7|1|B5|U|638, 9DP7|1|B5|U|639, 9DP7|1|B5|U|694, 9DP7|1|B5|C|696, 9DP7|1|B5|C|697, 9DP7|1|B5|A|740, 9DP7|1|B5|U|742, 9DP7|1|B5|U|813, 9DP7|1|B5|G|815, 9DP7|1|B5|A|856
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9DP7|1|B5|A|636
9DP7|1|B5|C|637
9DP7|1|B5|U|638
9DP7|1|B5|U|639
9DP7|1|B5|U|640
9DP7|1|B5|G|641
*
9DP7|1|B5|U|693
9DP7|1|B5|U|694
9DP7|1|B5|U|695
9DP7|1|B5|C|696
9DP7|1|B5|C|697
9DP7|1|B5|U|698
9DP7|1|B5|U|699
9DP7|1|B5|C|700
*
9DP7|1|B5|G|738
9DP7|1|B5|G|739
9DP7|1|B5|A|740
9DP7|1|B5|C|741
9DP7|1|B5|U|742
9DP7|1|B5|U|743
9DP7|1|B5|U|744
*
9DP7|1|B5|A|807
9DP7|1|B5|U|808
9DP7|1|B5|A|809
9DP7|1|B5|G|810
9DP7|1|B5|A|811
9DP7|1|B5|A|812
9DP7|1|B5|U|813
9DP7|1|B5|A|814
9DP7|1|B5|G|815
9DP7|1|B5|G|816
9DP7|1|B5|A|817
9DP7|1|B5|C|818
9DP7|1|B5|G|819
9DP7|1|B5|U|820
9DP7|1|B5|U|821
9DP7|1|B5|U|822
9DP7|1|B5|G|823
9DP7|1|B5|G|824
*
9DP7|1|B5|C|848
9DP7|1|B5|C|849
9DP7|1|B5|A|850
9DP7|1|B5|U|851
9DP7|1|B5|C|852
9DP7|1|B5|G|853
9DP7|1|B5|U|854
9DP7|1|B5|A|855
9DP7|1|B5|A|856
9DP7|1|B5|U|857
9DP7|1|B5|G|858
9DP7|1|B5|A|859
9DP7|1|B5|U|860
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain AR
- 60S ribosomal protein L19-A
- Chain BE
- 40S ribosomal protein S4-A
- Chain BH
- 40S ribosomal protein S7-A
- Chain BL
- 40S ribosomal protein S11-A
- Chain BN
- 40S ribosomal protein S13
- Chain BW
- Small ribosomal subunit protein uS8A
Coloring options: