J5_9EBB_002

3D structure

PDB id

9EBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUAAAC*GGGUUGUG*CGAGUAG*UGAAUCCG*UAAG

Length

33 nucleotides

Bulged bases

9EBB|1|I|U|319, 9EBB|1|I|C|494

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9EBB|1|I|C|270
9EBB|1|I|U|271
9EBB|1|I|A|272
9EBB|1|I|A|273
9EBB|1|I|A|274
9EBB|1|I|C|275
*
9EBB|1|I|G|313
9EBB|1|I|G|314
9EBB|1|I|G|315
9EBB|1|I|U|316
9EBB|1|I|U|317
9EBB|1|I|G|318
9EBB|1|I|U|319
9EBB|1|I|G|320
*
9EBB|1|I|C|458
9EBB|1|I|G|459
9EBB|1|I|A|460
9EBB|1|I|G|461
9EBB|1|I|U|462
9EBB|1|I|A|463
9EBB|1|I|G|464
*
9EBB|1|I|U|488
9EBB|1|I|G|489
9EBB|1|I|A|490
9EBB|1|I|A|491
9EBB|1|I|U|492
9EBB|1|I|C|493
9EBB|1|I|C|494
9EBB|1|I|G|495
*
9EBB|1|I|U|510
9EBB|1|I|A|511
9EBB|1|I|A|512
9EBB|1|I|G|513

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain y

Large ribosomal subunit protein bL28