Loop J5_9EBB

3D structure

PDB id: 9EBB (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.7 Å

Loop

Sequence: AAAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUCU
Length: 37 nucleotides
Bulged bases: 9EBB|1|I|A|2300, 9EBB|1|I|A|2686, 9EBB|1|I|U|2687, 9EBB|1|I|U|2823, 9EBB|1|I|U|2847
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9EBB|1|I|A|2295
9EBB|1|I|A|2296
9EBB|1|I|A|2297
9EBB|1|I|A|2298
9EBB|1|I|G|2299
9EBB|1|I|A|2300
9EBB|1|I|C|2301
9EBB|1|I|C|2302
*
9EBB|1|I|G|2684
9EBB|1|I|G|2685
9EBB|1|I|A|2686
9EBB|1|I|U|2687
9EBB|1|I|A|2688
9EBB|1|I|A|2689
9EBB|1|I|C|2690
9EBB|1|I|A|2691
*
9EBB|1|I|U|2738
9EBB|1|I|C|2739
9EBB|1|I|G|2740
9EBB|1|I|A|2741
9EBB|1|I|U|2742
9EBB|1|I|G|2743
9EBB|1|I|U|2744
9EBB|1|I|C|2745
*
9EBB|1|I|G|2820
9EBB|1|I|G|2821
9EBB|1|I|U|2822
9EBB|1|I|U|2823
9EBB|1|I|U|2824
9EBB|1|I|A|2825
9EBB|1|I|G|2826
*
9EBB|1|I|C|2844
9EBB|1|I|G|2845
9EBB|1|I|G|2846
9EBB|1|I|U|2847
9EBB|1|I|C|2848
9EBB|1|I|U|2849

Current chains

Chain I: 23S ribosomal RNA

Nearby chains

Chain 0: 50S ribosomal protein L32
Chain 1: DUF5302 domain-containing protein
Chain C: 50S ribosomal protein L2
Chain D: 50S ribosomal protein L3
Chain E: 50S ribosomal protein L4
Chain L: 50S ribosomal protein L15
Chain M: 50S ribosomal protein L16
Chain S: 50S ribosomal protein L22

J5_9EBB_007