J5_9EC3_005
3D structure
- PDB id
- 9EC3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.29 Å
Loop
- Sequence
- GCAAAAUGC*GA*UC*GAAACCAGU*AAC
- Length
- 25 nucleotides
- Bulged bases
- 9EC3|1|I|A|1992, 9EC3|1|I|G|1997
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9EC3_005 not in the Motif Atlas
- Homologous match to J5_8B0X_007
- Geometric discrepancy: 0.2035
- The information below is about J5_8B0X_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.3
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
9EC3|1|I|G|1909
9EC3|1|I|C|1910
9EC3|1|I|A|1911
9EC3|1|I|A|1912
9EC3|1|I|A|1913
9EC3|1|I|A|1914
9EC3|1|I|U|1915
9EC3|1|I|G|1916
9EC3|1|I|C|1917
*
9EC3|1|I|G|1941
9EC3|1|I|A|1942
*
9EC3|1|I|U|1985
9EC3|1|I|C|1986
*
9EC3|1|I|G|1990
9EC3|1|I|A|1991
9EC3|1|I|A|1992
9EC3|1|I|A|1993
9EC3|1|I|C|1994
9EC3|1|I|C|1995
9EC3|1|I|A|1996
9EC3|1|I|G|1997
9EC3|1|I|U|1998
*
9EC3|1|I|A|2226
9EC3|1|I|A|2227
9EC3|1|I|C|2228
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain K
- Large ribosomal subunit protein uL14
- Chain P
- 50S ribosomal protein L19
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: