Loop J5_9EC3

3D structure

PDB id: 9EC3 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.29 Å

Loop

Sequence: AAAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUCU
Length: 37 nucleotides
Bulged bases: 9EC3|1|I|A|2300, 9EC3|1|I|A|2686, 9EC3|1|I|U|2847
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9EC3|1|I|A|2295
9EC3|1|I|A|2296
9EC3|1|I|A|2297
9EC3|1|I|A|2298
9EC3|1|I|G|2299
9EC3|1|I|A|2300
9EC3|1|I|C|2301
9EC3|1|I|C|2302
*
9EC3|1|I|G|2684
9EC3|1|I|G|2685
9EC3|1|I|A|2686
9EC3|1|I|U|2687
9EC3|1|I|A|2688
9EC3|1|I|A|2689
9EC3|1|I|C|2690
9EC3|1|I|A|2691
*
9EC3|1|I|U|2738
9EC3|1|I|C|2739
9EC3|1|I|G|2740
9EC3|1|I|A|2741
9EC3|1|I|U|2742
9EC3|1|I|G|2743
9EC3|1|I|U|2744
9EC3|1|I|C|2745
*
9EC3|1|I|G|2820
9EC3|1|I|G|2821
9EC3|1|I|U|2822
9EC3|1|I|U|2823
9EC3|1|I|U|2824
9EC3|1|I|A|2825
9EC3|1|I|G|2826
*
9EC3|1|I|C|2844
9EC3|1|I|G|2845
9EC3|1|I|G|2846
9EC3|1|I|U|2847
9EC3|1|I|C|2848
9EC3|1|I|U|2849

Current chains

Chain I: 23S ribosomal RNA

Nearby chains

Chain 0: 50S ribosomal protein L32
Chain 1: DUF5302 domain-containing protein
Chain C: 50S ribosomal protein L2
Chain D: 50S ribosomal protein L3
Chain E: 50S ribosomal protein L4
Chain L: 50S ribosomal protein L15
Chain M: 50S ribosomal protein L16
Chain S: 50S ribosomal protein L22
Chain u: Transfer RNA; tRNA

J5_9EC3_006