J5_9EC3_009

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

CUGG*CGUG*CUUUCAC*GAGAAGAAG*CGAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9EC3_009 not in the Motif Atlas

Homologous match to J5_8B0X_002

Geometric discrepancy: 0.1392

The information below is about J5_8B0X_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9EC3|1|a|C|39
9EC3|1|a|U|40
9EC3|1|a|G|41
9EC3|1|a|G|42
*
9EC3|1|a|C|402
9EC3|1|a|G|403
9EC3|1|a|U|404
9EC3|1|a|G|405
*
9EC3|1|a|C|435
9EC3|1|a|U|436
9EC3|1|a|U|437
9EC3|1|a|U|438
9EC3|1|a|C|439
9EC3|1|a|A|440
9EC3|1|a|C|441
*
9EC3|1|a|G|483
9EC3|1|a|A|484
9EC3|1|a|G|485
9EC3|1|a|A|486
9EC3|1|a|A|487
9EC3|1|a|G|488
9EC3|1|a|A|489
9EC3|1|a|A|490
9EC3|1|a|G|491
*
9EC3|1|a|C|536
9EC3|1|a|G|537
9EC3|1|a|A|538
9EC3|1|a|G|539

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain l

30S ribosomal protein S12