J5_9EC3_010

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

CAAG*CGAACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

9EC3|1|a|A|104, 9EC3|1|a|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9EC3_010 not in the Motif Atlas

Homologous match to J5_8B0X_003

Geometric discrepancy: 0.1254

The information below is about J5_8B0X_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.3

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

6

Unit IDs

9EC3|1|a|C|61
9EC3|1|a|A|62
9EC3|1|a|A|63
9EC3|1|a|G|64
*
9EC3|1|a|C|101
9EC3|1|a|G|102
9EC3|1|a|A|103
9EC3|1|a|A|104
9EC3|1|a|C|105
9EC3|1|a|G|106
9EC3|1|a|G|107
9EC3|1|a|G|108
*
9EC3|1|a|C|313
9EC3|1|a|A|314
9EC3|1|a|C|315
*
9EC3|1|a|G|336
9EC3|1|a|A|337
9EC3|1|a|C|338
*
9EC3|1|a|G|349
9EC3|1|a|G|350
9EC3|1|a|C|351
9EC3|1|a|A|352
9EC3|1|a|G|353

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain K

Large ribosomal subunit protein uL14

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20