J5_9EHO_002
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 9EHO|1|5|U|2107
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9EHO|1|5|G|1060
9EHO|1|5|G|1061
9EHO|1|5|A|1062
9EHO|1|5|G|1063
9EHO|1|5|U|1064
9EHO|1|5|C|1065
*
9EHO|1|5|G|1369
9EHO|1|5|G|1370
9EHO|1|5|A|1371
9EHO|1|5|C|1372
*
9EHO|1|5|G|1511
9EHO|1|5|U|1512
9EHO|1|5|U|1513
9EHO|1|5|C|1514
*
9EHO|1|5|G|2045
9EHO|1|5|C|2046
*
9EHO|1|5|G|2102
9EHO|1|5|C|2103
9EHO|1|5|A|2104
9EHO|1|5|G|2105
9EHO|1|5|A|2106
9EHO|1|5|U|2107
9EHO|1|5|C|2108
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- Large ribosomal subunit protein uL4 C-terminal domain-containing protein
- Chain L
- Large ribosomal subunit protein eL13
- Chain N
- Ribosomal protein L15
- Chain a
- Large ribosomal subunit protein uL15
- Chain e
- 60S ribosomal protein L32
- Chain r
- Large ribosomal subunit protein eL28
Coloring options: