J5_9EHO_003
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAG*CACAG*CGAG*CC*GUGUAG
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9EHO|1|5|C|1077
9EHO|1|5|G|1078
9EHO|1|5|A|1079
9EHO|1|5|G|1080
*
9EHO|1|5|C|1115
9EHO|1|5|A|1116
9EHO|1|5|C|1117
9EHO|1|5|A|1118
9EHO|1|5|G|1119
*
9EHO|1|5|C|1126
9EHO|1|5|G|1127
9EHO|1|5|A|1128
9EHO|1|5|G|1129
*
9EHO|1|5|C|1296
9EHO|1|5|C|1297
*
9EHO|1|5|G|1352
9EHO|1|5|U|1353
9EHO|1|5|G|1354
9EHO|1|5|U|1355
9EHO|1|5|A|1356
9EHO|1|5|G|1357
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL4 C-terminal domain-containing protein
- Chain L
- Large ribosomal subunit protein eL13
- Chain Q
- Large ribosomal subunit protein uL15/eL18 domain-containing protein
- Chain a
- Large ribosomal subunit protein uL15
- Chain b
- 60S ribosomal protein L29
- Chain i
- Large ribosomal subunit protein eL36
Coloring options: