J5_9EHO_004
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCAAAAUGG*UG*UG*CGGACCGGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 9EHO|1|5|G|3431, 9EHO|1|5|G|3436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9EHO|1|5|G|2707
9EHO|1|5|C|2708
9EHO|1|5|A|2709
9EHO|1|5|A|2710
9EHO|1|5|A|2711
9EHO|1|5|A|2712
9EHO|1|5|U|2713
9EHO|1|5|G|2714
9EHO|1|5|G|2715
*
9EHO|1|5|U|2739
9EHO|1|5|G|2740
*
9EHO|1|5|U|3424
9EHO|1|5|G|3425
*
9EHO|1|5|C|3429
9EHO|1|5|G|3430
9EHO|1|5|G|3431
9EHO|1|5|A|3432
9EHO|1|5|C|3433
9EHO|1|5|C|3434
9EHO|1|5|G|3435
9EHO|1|5|G|3436
9EHO|1|5|G|3437
*
9EHO|1|5|C|3646
9EHO|1|5|A|3647
9EHO|1|5|C|3648
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain B
- 60S ribosomal protein L3
- Chain JJ
- 40S ribosomal protein S8
- Chain R
- Ribosomal protein L19
- Chain V
- Large ribosomal subunit protein uL14
- Chain W
- Large ribosomal subunit protein eL24
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