J5_9EHO_005
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 9EHO|1|5|A|3719, 9EHO|1|5|A|4358, 9EHO|1|5|G|4415, 9EHO|1|5|U|4519, 9EHO|1|5|U|4520
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9EHO|1|5|A|3714
9EHO|1|5|G|3715
9EHO|1|5|A|3716
9EHO|1|5|A|3717
9EHO|1|5|G|3718
9EHO|1|5|A|3719
9EHO|1|5|C|3720
9EHO|1|5|C|3721
*
9EHO|1|5|G|4356
9EHO|1|5|G|4357
9EHO|1|5|A|4358
9EHO|1|5|U|4359
9EHO|1|5|A|4360
9EHO|1|5|A|4361
9EHO|1|5|C|4362
9EHO|1|5|U|4363
9EHO|1|5|G|4364
*
9EHO|1|5|C|4408
9EHO|1|5|U|4409
9EHO|1|5|U|4410
9EHO|1|5|C|4411
9EHO|1|5|G|4412
9EHO|1|5|A|4413
9EHO|1|5|U|4414
9EHO|1|5|G|4415
9EHO|1|5|U|4416
9EHO|1|5|C|4417
*
9EHO|1|5|G|4492
9EHO|1|5|G|4493
9EHO|1|5|U|4494
9EHO|1|5|U|4495
9EHO|1|5|U|4496
9EHO|1|5|A|4497
9EHO|1|5|G|4498
*
9EHO|1|5|U|4516
9EHO|1|5|A|4517
9EHO|1|5|G|4518
9EHO|1|5|U|4519
9EHO|1|5|U|4520
9EHO|1|5|U|4521
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain A
- Large ribosomal subunit protein uL2
- Chain B
- 60S ribosomal protein L3
- Chain C
- Large ribosomal subunit protein uL4 C-terminal domain-containing protein
- Chain a
- Large ribosomal subunit protein uL15
- Chain b
- 60S ribosomal protein L29
Coloring options: