J5_9EHO_006
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUGA*UUUG*CG*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 9EHO|1|5|G|3733, 9EHO|1|5|A|4340, 9EHO|1|5|G|4341, 9EHO|1|5|A|4342, 9EHO|1|5|A|4343
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9EHO|1|5|U|3731
9EHO|1|5|U|3732
9EHO|1|5|G|3733
9EHO|1|5|A|3734
*
9EHO|1|5|U|4144
9EHO|1|5|U|4145
9EHO|1|5|U|4146
9EHO|1|5|G|4147
*
9EHO|1|5|C|4160
9EHO|1|5|G|4161
*
9EHO|1|5|U|4183
9EHO|1|5|G|4184
*
9EHO|1|5|C|4339
9EHO|1|5|A|4340
9EHO|1|5|G|4341
9EHO|1|5|A|4342
9EHO|1|5|A|4343
9EHO|1|5|A|4344
9EHO|1|5|A|4345
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 3
- Transfer RNA; tRNA
- Chain A
- Large ribosomal subunit protein uL2
- Chain N
- Ribosomal protein L15
- Chain Q
- Large ribosomal subunit protein uL15/eL18 domain-containing protein
- Chain T
- 60S ribosomal protein L21
- Chain a
- Large ribosomal subunit protein uL15
- Chain b
- 60S ribosomal protein L29
- Chain o
- Large ribosomal subunit protein eL42
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