J5_9EHO_007

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCGAC*GUAG

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9EHO|1|AA|C|31
9EHO|1|AA|U|32
9EHO|1|AA|U|33
9EHO|1|AA|G|34
9EHO|1|AA|U|35
*
9EHO|1|AA|A|766
9EHO|1|AA|A|767
9EHO|1|AA|A|768
9EHO|1|AA|U|769
9EHO|1|AA|A|770
9EHO|1|AA|A|771
9EHO|1|AA|C|772
*
9EHO|1|AA|G|803
9EHO|1|AA|G|804
9EHO|1|AA|A|805
9EHO|1|AA|A|806
9EHO|1|AA|U|807
9EHO|1|AA|G|808
9EHO|1|AA|A|809
9EHO|1|AA|G|810
*
9EHO|1|AA|C|830
9EHO|1|AA|G|831
9EHO|1|AA|A|832
9EHO|1|AA|G|833
9EHO|1|AA|G|834
9EHO|1|AA|A|835
9EHO|1|AA|U|836
9EHO|1|AA|C|837
9EHO|1|AA|G|838
9EHO|1|AA|A|839
9EHO|1|AA|C|840
*
9EHO|1|AA|G|886
9EHO|1|AA|U|887
9EHO|1|AA|A|888
9EHO|1|AA|G|889

Current chains

Chain AA

18S rRNA

Nearby chains

Chain KK

Small ribosomal subunit protein uS4

Chain YY

Small ribosomal subunit protein uS12

Chain ff

eS30