J5_9F1C_004

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

9F1C|1|A2|G|126, 9F1C|1|A2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9F1C|1|A2|G|123
9F1C|1|A2|U|124
9F1C|1|A2|C|125
9F1C|1|A2|G|126
9F1C|1|A2|C|127
9F1C|1|A2|U|128
9F1C|1|A2|C|129
*
9F1C|1|A2|G|183
9F1C|1|A2|G|184
9F1C|1|A2|G|185
*
9F1C|1|A2|U|214
9F1C|1|A2|G|215
*
9F1C|1|A2|C|311
9F1C|1|A2|C|312
9F1C|1|A2|G|313
*
9F1C|1|A2|C|338
9F1C|1|A2|G|339
9F1C|1|A2|A|340
9F1C|1|A2|C|341
9F1C|1|A2|C|342

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Af

40S ribosomal protein S6

Chain Ah

40S ribosomal protein S8